Appunti di informatica

Fa da intermediario tra NeMo e iSpike

http://spikestream.sourceforge.net/pages/download.html

• spikestream-0.2.1.tar.gz
• spikestream-0.2.1-compilato.zip

Utilizza un database MySQL e dei plugin

• Dipendenza libqwt-dev libqt4-sql libqt4-gui? (133 MB)
• non installare libqwt-dev, ma libqwt5-qt4-dev
• libgmp-dev
• SpikeStream dipendenza MySQL
• libqt4-sql-mysql
• Dipendenza da Nemo, Boost, Cuda, quindi vedere installazione di NeMo

aggiungere alla riga 1 in ./spikestream.pro

QMAKE_CXX = /usr/bin/gcc-4.7

aggiungere alla riga 11 in applicantionlibrary/include/NetworkViewer.h

#include <GL/glu.h>

@debian jessie: sostituire queste righe in spikestream.pri

unix:!macx {
     # Qwt
     INCLUDEPATH += /usr/include/qwt-qt4/
     LIBS += -lqwt-qt4 -L/usr/local/qwt-5.2.1-svn/lib

     # GMP
     INCLUDEPATH += /usr/include/i386-linux-gnu/
     LIBS += -L/usr/lib/i386-linux-gnu -lgmpxx -lgmp	

     #GLU
     LIBS += -lGLU 
}

qmake spikestream.pro
make clean
make
make install

make install (spikestream install) non funziona molto bene, quindi gli eseguibili si trovano nella cartella ./bin

file alla radice della cartella dei sorgenti

spikestream.config

# Configuration file for SpikeStream application
# Each configuration item must have a unique name.
# SpikeStream needs to be restarted for any changes to take effect

# PARAMETERS FOR SpikeStreamNetwork DATABASE 
spikeStreamNetworkHost = localhost
spikeStreamNetworkUser = spikestream
spikeStreamNetworkPassword = spikestream

# PARAMETERS FOR SpikeStreamArchive DATABASE
spikeStreamArchiveHost = localhost
spikeStreamArchiveUser = spikestream
spikeStreamArchivePassword = spikestream

# PARAMETERS FOR SpikeStreamAnalysis DATABASE
spikeStreamAnalysisHost = localhost
spikeStreamAnalysisUser = spikestream
spikeStreamAnalysisPassword = spikestream

# FILE PARAMETERS
default_file_location = /home/terry/spikestream

# VIEWING PARAMETERS
vertex_size = 7.5
draw_axes = true
maximize_gui = true
sphere_radius = 0.1
sphere_quality = 6
connection_quality = 8
minimum_connection_radius = 0.01
weight_radius_factor = 0.25
connection_visibility_threshold_fast =  500000
connection_visibility_threshold_full =  10000
connection_thinning_threshold_fast = 10000
connection_thinning_threshold_full = 1000

# DATABASE OPTIMIZATION PARAMETERS
number_insert_connection_buffers = 100
number_insert_neuron_buffers = 100

per poterli eseguire dal terminale bisogna prima configurare la variabile di ambiente

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib

Il programma dbconfigtool spikestream crea tre database con le tabelle

spikestream esempio1